PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca38493.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 763aa    MW: 87962.9 Da    PI: 7.7146
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca38493.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR121.76.5e-0743135689
        FAR1   6 YAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek....dgk...wevtkle..leHnHel 89 
                  A   GF ++k+++ ++ +r+ e   + f+Cs++g++++  +  ++ +++ ++++++C+ +++  +++    +++   w++t  +    HnH+l
  Dca38493.1  43 IALANGFALVKANNGSKnRRQPELLASYFRCSRYGRSKSVFDP-DNPKKKPKTQKCDCQFRIRAVQNYhcvdNERiilWNITIAKkfGFHNHDL 135
                 57889***99988765549999**************9998877.67777778888888888876555445422212336665555445688888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105511.5E-24251346IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MSDAELVDSF ENLGGDGVDY NPLFVTSDCF ADSKLAHKWA NEIALANGFA LVKANNGSKN  60
RRQPELLASY FRCSRYGRSK SVFDPDNPKK KPKTQKCDCQ FRIRAVQNYH CVDNERIILW  120
NITIAKKFGF HNHDLIKYKD GHRHYAGLDE DEKAFVKQEY SSSIAPRDIK SGLHHRTPDK  180
PPPSSRQIYN HTSMLRKELM GERNPAQQML ALAVNANYVH WHETNHMTHE LTHVFMSHPE  240
AIKLFRAYPH VILMDSTYKT NIYKMTLVEV VGVTPVGSSF LIACVLIPTE SEEGYTWLLR  300
RLMDILECTG TSPSAFVTDR ELGLVGAHRK LYPDTPHLFC RWHVNRAIEN RALLIHKTEW  360
YKNHVLRNSE TGWYNVINAQ SEEAFKDAWV AFNSKWTKLS SYVSNTWGEH ASKFVLCYTN  420
DYFHLGNTAT SRVESAHSLL KAWLKSAHLT LDTMWSRIHS MIEAQQCKIR KELEDSRSRP  480
RITHRLFSLL HGKVSIKAIE IMESEIRRGE ALGVGLEDRC GCTLITTHGL PCSCRLIGLK  540
NKGRRVHLGD VNAFWRTLEF DSDEVMPKND IDLFDELVEK ARKSDPAHQK IFIETLRNCL  600
HPEDEDIRPP AIRENPKGEV GAPLEKDYTI GIFSSWTKRY GVPECLWSFF DGWKDVGNDG  660
HCGYRVISHA QRGQEEDYVV MREWEITEIT THDVYKDFFG VTYKMPNGYT TYENTLRRIG  720
FFSKSPCGDD HWLCSDDFFV FASMFNWTIC VIGQYKDRKG DKA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18793PKKKPKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-15FAR1 family protein